Here is a list of all functions, variables, defines, enums, and typedefs with links to the files they belong to:
- s -
- safe_fopen() : util.h, util.cpp
- safe_strcat() : util.h, util.cpp
- safe_strdup() : util.h, util.cpp
- SBase_addCVTerm() : SBase.h, SBase.cpp
- SBase_addCVTermNewBag() : SBase.h, SBase.cpp
- SBase_appendAnnotation() : SBase.h, SBase.cpp
- SBase_appendAnnotationString() : SBase.cpp, SBase.h
- SBase_appendNotes() : SBase.cpp, SBase.h
- SBase_appendNotesString() : SBase.cpp, SBase.h
- SBase_getAllElements() : SBase.cpp, SBase.h
- SBase_getAllElementsFromPlugins() : SBase.cpp, SBase.h
- SBase_getAncestorOfType() : SBase.cpp, SBase.h
- SBase_getAnnotation() : SBase.cpp, SBase.h
- SBase_getAnnotationString() : SBase.h, SBase.cpp
- SBase_getColumn() : SBase.cpp, SBase.h
- SBase_getCVTerm() : SBase.cpp, SBase.h
- SBase_getCVTerms() : SBase.cpp, SBase.h
- SBase_getElementByMetaId() : SBase.cpp, SBase.h
- SBase_getElementBySId() : SBase.cpp, SBase.h
- SBase_getElementFromPluginsByMetaId() : SBase.cpp, SBase.h
- SBase_getElementFromPluginsBySId() : SBase.cpp, SBase.h
- SBase_getElementName() : SBase.cpp, SBase.h
- SBase_getIdAttribute() : SBase.h, SBase.cpp
- SBase_getLevel() : SBase.cpp, SBase.h
- SBase_getLine() : SBase.cpp, SBase.h
- SBase_getMetaId() : SBase.cpp, SBase.h
- SBase_getModel() : SBase.cpp, SBase.h
- SBase_getModelHistory() : SBase.cpp, SBase.h
- SBase_getName() : SBase.cpp, SBase.h
- SBase_getNotes() : SBase.cpp, SBase.h
- SBase_getNotesString() : SBase.cpp, SBase.h
- SBase_getNumCVTerms() : SBase.cpp, SBase.h
- SBase_getNumPlugins() : SBase.cpp, SBase.h
- SBase_getPackageName() : SBase.cpp, SBase.h
- SBase_getParentSBMLObject() : SBase.cpp, SBase.h
- SBase_getPlugin() : SBase.cpp, SBase.h
- SBase_getResourceBiologicalQualifier() : SBase.cpp, SBase.h
- SBase_getResourceModelQualifier() : SBase.cpp, SBase.h
- SBase_getSBMLDocument() : SBase.cpp, SBase.h
- SBase_getSBOTerm() : SBase.cpp, SBase.h
- SBase_getSBOTermAsURL() : SBase.cpp, SBase.h
- SBase_getSBOTermID() : SBase.h, SBase.cpp
- SBase_getTypeCode() : SBase.cpp, SBase.h
- SBase_getUserData() : SBase.cpp, SBase.h
- SBase_getVersion() : SBase.cpp, SBase.h
- SBase_hasValidLevelVersionNamespaceCombination() : SBase.cpp, SBase.h
- SBase_isSetAnnotation() : SBase.cpp, SBase.h
- SBase_isSetIdAttribute() : SBase.cpp, SBase.h
- SBase_isSetMetaId() : SBase.cpp, SBase.h
- SBase_isSetModelHistory() : SBase.cpp, SBase.h
- SBase_isSetName() : SBase.cpp, SBase.h
- SBase_isSetNotes() : SBase.cpp, SBase.h
- SBase_isSetSBOTerm() : SBase.cpp, SBase.h
- SBase_isSetUserData() : SBase.cpp, SBase.h
- SBase_removeTopLevelAnnotationElement() : SBase.cpp, SBase.h
- SBase_removeTopLevelAnnotationElementWithURI() : SBase.cpp, SBase.h
- SBase_renameMetaIdRefs() : SBase.cpp, SBase.h
- SBase_renameSIdRefs() : SBase.cpp, SBase.h
- SBase_renameUnitSIdRefs() : SBase.cpp, SBase.h
- SBase_replaceTopLevelAnnotationElement() : SBase.cpp, SBase.h
- SBase_replaceTopLevelAnnotationElementString() : SBase.cpp, SBase.h
- SBase_setAnnotation() : SBase.cpp, SBase.h
- SBase_setAnnotationString() : SBase.cpp, SBase.h
- SBase_setIdAttribute() : SBase.cpp, SBase.h
- SBase_setMetaId() : SBase.cpp, SBase.h
- SBase_setModelHistory() : SBase.cpp, SBase.h
- SBase_setName() : SBase.cpp, SBase.h
- SBase_setNamespaces() : SBase.cpp, SBase.h
- SBase_setNotes() : SBase.cpp, SBase.h
- SBase_setNotesString() : SBase.cpp, SBase.h
- SBase_setNotesStringAddMarkup() : SBase.cpp, SBase.h
- SBase_setSBOTerm() : SBase.cpp, SBase.h
- SBase_setSBOTermID() : SBase.cpp, SBase.h
- SBase_setUserData() : SBase.cpp, SBase.h
- SBase_unsetAnnotation() : SBase.cpp, SBase.h
- SBase_unsetCVTerms() : SBase.cpp, SBase.h
- SBase_unsetIdAttribute() : SBase.cpp, SBase.h
- SBase_unsetMetaId() : SBase.cpp, SBase.h
- SBase_unsetModelHistory() : SBase.cpp, SBase.h
- SBase_unsetName() : SBase.cpp, SBase.h
- SBase_unsetNotes() : SBase.cpp, SBase.h
- SBase_unsetSBOTerm() : SBase.cpp, SBase.h
- SBase_unsetUserData() : SBase.cpp, SBase.h
- SBaseExtensionPoint_clone() : SBaseExtensionPoint.cpp, SBaseExtensionPoint.h
- SBaseExtensionPoint_create() : SBaseExtensionPoint.cpp, SBaseExtensionPoint.h
- SBaseExtensionPoint_free() : SBaseExtensionPoint.cpp, SBaseExtensionPoint.h
- SBaseExtensionPoint_getPackageName() : SBaseExtensionPoint.cpp, SBaseExtensionPoint.h
- SBaseExtensionPoint_getTypeCode() : SBaseExtensionPoint.h, SBaseExtensionPoint.cpp
- SBasePlugin_addExpectedAttributes() : SBasePlugin.h
- SBasePlugin_clone() : SBasePlugin.h
- SBasePlugin_connectToParent() : SBasePlugin.h
- SBasePlugin_createObject() : SBasePlugin.h
- SBasePlugin_enablePackageInternal() : SBasePlugin.h
- SBasePlugin_free() : SBasePlugin.h
- SBasePlugin_getLevel() : SBasePlugin.h
- SBasePlugin_getPackageName() : SBasePlugin.h
- SBasePlugin_getPackageVersion() : SBasePlugin.h
- SBasePlugin_getParentSBMLObject() : SBasePlugin.h
- SBasePlugin_getPrefix() : SBasePlugin.h
- SBasePlugin_getSBMLDocument() : SBasePlugin.h
- SBasePlugin_getURI() : SBasePlugin.h
- SBasePlugin_getVersion() : SBasePlugin.h
- SBasePlugin_hasRequiredAttributes() : SBasePlugin.h
- SBasePlugin_hasRequiredElements() : SBasePlugin.h
- SBasePlugin_readAttributes() : SBasePlugin.h
- SBasePlugin_readOtherXML() : SBasePlugin.h
- SBasePlugin_setSBMLDocument() : SBasePlugin.h
- SBasePlugin_writeAttributes() : SBasePlugin.h
- SBasePlugin_writeElements() : SBasePlugin.h
- SBasePlugin_writeXMLNS() : SBasePlugin.h
- SBasePluginCreator_clone() : SBasePluginCreatorBase.h
- SBasePluginCreator_createPlugin() : SBasePluginCreatorBase.h
- SBasePluginCreator_free() : SBasePluginCreatorBase.h
- SBasePluginCreator_getNumOfSupportedPackageURI() : SBasePluginCreatorBase.h
- SBasePluginCreator_getSupportedPackageURI() : SBasePluginCreatorBase.h
- SBasePluginCreator_getTargetExtensionPoint() : SBasePluginCreatorBase.h
- SBasePluginCreator_getTargetPackageName() : SBasePluginCreatorBase.h
- SBasePluginCreator_getTargetSBMLTypeCode() : SBasePluginCreatorBase.h
- SBasePluginCreator_isSupported() : SBasePluginCreatorBase.h
- SBaseRef_clone() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_create() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_free() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_getIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_getMetaIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_getPortRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_getSBaseRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_getUnitRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_hasRequiredAttributes() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_isSetIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_isSetMetaIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_isSetPortRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_isSetSBaseRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_isSetUnitRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_setIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_setMetaIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_setPortRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_setSBaseRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_setUnitRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_unsetIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_unsetMetaIdRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_unsetPortRef() : SBaseRef.cpp, SBaseRef.h
- SBaseRef_unsetSBaseRef() : SBaseRef.h, SBaseRef.cpp
- SBaseRef_unsetUnitRef() : SBaseRef.cpp, SBaseRef.h
- SBML_ALGEBRAIC_RULE : SBMLTypeCodes.h
- SBML_ASSIGNMENT_RULE : SBMLTypeCodes.h
- SBML_COMP_DELETION : CompExtension.h
- SBML_COMP_EXTERNALMODELDEFINITION : CompExtension.h
- SBML_COMP_MODELDEFINITION : CompExtension.h
- SBML_COMP_PORT : CompExtension.h
- SBML_COMP_REPLACEDBY : CompExtension.h
- SBML_COMP_REPLACEDELEMENT : CompExtension.h
- SBML_COMP_SBASEREF : CompExtension.h
- SBML_COMP_SUBMODEL : CompExtension.h
- SBML_COMPARTMENT : SBMLTypeCodes.h
- SBML_COMPARTMENT_TYPE : SBMLTypeCodes.h
- SBML_COMPARTMENT_VOLUME_RULE : SBMLTypeCodes.h
- SBML_CONSTRAINT : SBMLTypeCodes.h
- SBML_DEFAULT_LEVEL : SBMLNamespaces.h
- SBML_DEFAULT_VERSION : SBMLNamespaces.h
- SBML_DELAY : SBMLTypeCodes.h
- SBML_deleteL3Parser() : L3Parser.h
- SBML_DOCUMENT : SBMLTypeCodes.h
- SBML_EVENT : SBMLTypeCodes.h
- SBML_EVENT_ASSIGNMENT : SBMLTypeCodes.h
- SBML_FBC_AND : FbcExtension.h
- SBML_FBC_ASSOCIATION : FbcExtension.h
- SBML_FBC_FLUXBOUND : FbcExtension.h
- SBML_FBC_FLUXOBJECTIVE : FbcExtension.h
- SBML_FBC_GENEASSOCIATION : FbcExtension.h
- SBML_FBC_GENEPRODUCT : FbcExtension.h
- SBML_FBC_GENEPRODUCTASSOCIATION : FbcExtension.h
- SBML_FBC_GENEPRODUCTREF : FbcExtension.h
- SBML_FBC_KEYVALUEPAIR : FbcExtension.h
- SBML_FBC_OBJECTIVE : FbcExtension.h
- SBML_FBC_OR : FbcExtension.h
- SBML_FBC_USERDEFINEDCONSTRAINT : FbcExtension.h
- SBML_FBC_USERDEFINEDCONSTRAINTCOMPONENT : FbcExtension.h
- SBML_FBC_V1ASSOCIATION : FbcExtension.h
- SBML_FBC_VARIABLE_TYPE_STRINGS : FbcExtension.cpp
- SBML_formulaToL3String() : L3FormulaFormatter.cpp, L3FormulaFormatter.h
- SBML_formulaToL3StringWithSettings() : L3FormulaFormatter.cpp, L3FormulaFormatter.h
- SBML_formulaToString() : FormulaFormatter.cpp, FormulaFormatter.h
- SBML_FUNCTION_DEFINITION : SBMLTypeCodes.h
- SBML_GENERIC_SBASE : SBMLTypeCodes.h
- SBML_getDefaultL3ParserSettings() : L3Parser.h
- SBML_getLastParseL3Error() : L3Parser.h
- SBML_GROUP_KIND_STRINGS : GroupsExtension.cpp
- SBML_GROUPS_GROUP : GroupsExtension.h
- SBML_GROUPS_MEMBER : GroupsExtension.h
- SBML_INITIAL_ASSIGNMENT : SBMLTypeCodes.h
- SBML_INT_MAX : common.h
- SBML_INT_MIN : common.h
- SBML_KINETIC_LAW : SBMLTypeCodes.h
- SBML_LAYOUT_BOUNDINGBOX : LayoutExtension.h
- SBML_LAYOUT_COMPARTMENTGLYPH : LayoutExtension.h
- SBML_LAYOUT_CUBICBEZIER : LayoutExtension.h
- SBML_LAYOUT_CURVE : LayoutExtension.h
- SBML_LAYOUT_DIMENSIONS : LayoutExtension.h
- SBML_LAYOUT_GENERALGLYPH : LayoutExtension.h
- SBML_LAYOUT_GRAPHICALOBJECT : LayoutExtension.h
- SBML_LAYOUT_LAYOUT : LayoutExtension.h
- SBML_LAYOUT_LINESEGMENT : LayoutExtension.h
- SBML_LAYOUT_POINT : LayoutExtension.h
- SBML_LAYOUT_REACTIONGLYPH : LayoutExtension.h
- SBML_LAYOUT_REFERENCEGLYPH : LayoutExtension.h
- SBML_LAYOUT_SPECIESGLYPH : LayoutExtension.h
- SBML_LAYOUT_SPECIESREFERENCEGLYPH : LayoutExtension.h
- SBML_LAYOUT_TEXTGLYPH : LayoutExtension.h
- SBML_LIST_OF : SBMLTypeCodes.h
- SBML_LOCAL_PARAMETER : SBMLTypeCodes.h
- SBML_MODEL : SBMLTypeCodes.h
- SBML_MODIFIER_SPECIES_REFERENCE : SBMLTypeCodes.h
- SBML_OPERATION_RETURN_VALUES_INDICES : operationReturnValues.cpp
- SBML_OPERATION_RETURN_VALUES_STRINGS : operationReturnValues.cpp
- SBML_PARAMETER : SBMLTypeCodes.h
- SBML_PARAMETER_RULE : SBMLTypeCodes.h
- SBML_parseFormula() : FormulaParser.cpp, FormulaParser.h
- SBML_parseL3Formula() : L3Parser.h
- SBML_parseL3FormulaWithModel() : L3Parser.h
- SBML_parseL3FormulaWithSettings() : L3Parser.h
- SBML_PRIORITY : SBMLTypeCodes.h
- SBML_QUAL_DEFAULT_TERM : QualExtension.h
- SBML_QUAL_FUNCTION_TERM : QualExtension.h
- SBML_QUAL_INPUT : QualExtension.h
- SBML_QUAL_OUTPUT : QualExtension.h
- SBML_QUAL_QUALITATIVE_SPECIES : QualExtension.h
- SBML_QUAL_TRANSITION : QualExtension.h
- SBML_RATE_RULE : SBMLTypeCodes.h
- SBML_REACTION : SBMLTypeCodes.h
- SBML_RULE : SBMLTypeCodes.h
- SBML_SPECIES : SBMLTypeCodes.h
- SBML_SPECIES_CONCENTRATION_RULE : SBMLTypeCodes.h
- SBML_SPECIES_REFERENCE : SBMLTypeCodes.h
- SBML_SPECIES_TYPE : SBMLTypeCodes.h
- SBML_STOICHIOMETRY_MATH : SBMLTypeCodes.h
- SBML_TRIGGER : SBMLTypeCodes.h
- SBML_TYPE_CODE_STRINGS : SBMLTypeCodes.cpp
- SBML_UNIT : SBMLTypeCodes.h
- SBML_UNIT_DEFINITION : SBMLTypeCodes.h
- SBML_UNKNOWN : SBMLTypeCodes.h
- SBML_XMLNS_L1 : SBMLNamespaces.h
- SBML_XMLNS_L2V1 : SBMLNamespaces.h
- SBML_XMLNS_L2V2 : SBMLNamespaces.h
- SBML_XMLNS_L2V3 : SBMLNamespaces.h
- SBML_XMLNS_L2V4 : SBMLNamespaces.h
- SBML_XMLNS_L2V5 : SBMLNamespaces.h
- SBML_XMLNS_L3V1 : SBMLNamespaces.h
- SBML_XMLNS_L3V2 : SBMLNamespaces.h
- SBMLCodesUpperBound : SBMLError.h
- SBMLCompTypeCode_t : CompExtension.h
- SBMLDocument_checkConsistency() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkInternalConsistency() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL1Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL2v1Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL2v2Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL2v3Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL2v4Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL2v5Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL3v1Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_checkL3v2Compatibility() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_clone() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_convert() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_create() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_createModel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_createWithLevelAndVersion() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_createWithSBMLNamespaces() : SBMLDocument.h, SBMLDocument.cpp
- SBMLDocument_expandFunctionDefintions() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_expandInitialAssignments() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_free() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getDefaultLevel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getDefaultVersion() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getError() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getErrorLog() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getErrorWithSeverity() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getLevel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getLocationURI() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getModel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getNamespaces() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getNumErrors() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getNumErrorsWithSeverity() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getPackageRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getPkgRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_getVersion() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_isSetModel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_isSetPackageRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_isSetPkgRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_printErrors() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setConsistencyChecks() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setConsistencyChecksForConversion() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setLevelAndVersion() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setLevelAndVersionNonStrict() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setLevelAndVersionStrict() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setLocationURI() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setModel() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setPackageRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setPkgRequired() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_setSBMLNamespaces() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocument_validateSBML() : SBMLDocument.cpp, SBMLDocument.h
- SBMLDocumentPlugin_addExpectedAttributes() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_clone() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_create() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_free() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_getRequired() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_isSetRequired() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_readAttributes() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_setRequired() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_unsetRequired() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLDocumentPlugin_writeAttributes() : SBMLDocumentPlugin.cpp, SBMLDocumentPlugin.h
- SBMLErrorCategory_t : SBMLError.h
- SBMLErrorCode_t : SBMLError.h
- SBMLErrorLog_add() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_clearLog() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_contains() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_create() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_free() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_getError() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_getErrorWithSeverity() : SBMLErrorLog.h, SBMLErrorLog.cpp
- SBMLErrorLog_getNumErrors() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_getNumFailsWithSeverity() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_remove() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorLog_removeAll() : SBMLErrorLog.cpp, SBMLErrorLog.h
- SBMLErrorSeverity_t : SBMLError.h
- SBMLExtension_addSBasePluginCreator() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_clone() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_free() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getLevel() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getName() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getNumOfSBasePlugins() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getNumOfSupportedPackageURI() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getPackageVersion() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getSBasePluginCreator() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getSBasePluginCreatorByIndex() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getSBMLExtensionNamespaces() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getStringFromTypeCode() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getSupportedPackageURI() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getURI() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_getVersion() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_isEnabled() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_isSupported() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtension_setEnabled() : SBMLExtension.cpp, SBMLExtension.h
- SBMLExtensionNamespaces_clone() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionNamespaces_free() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionNamespaces_getPackageName() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionNamespaces_getPackageVersion() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionNamespaces_getURI() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionNamespaces_setPackageVersion() : SBMLExtensionNamespaces.cpp, SBMLExtensionNamespaces.h
- SBMLExtensionRegistry_addExtension() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getExtension() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getNumExtensions() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getNumRegisteredPackages() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getRegisteredPackageName() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getRegisteredPackages() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getSBasePluginCreator() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getSBasePluginCreators() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_getSBasePluginCreatorsByURI() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_isEnabled() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_isRegistered() : SBMLExtensionRegistry.h
- SBMLExtensionRegistry_setEnabled() : SBMLExtensionRegistry.h
- SBMLFbcTypeCode_t : FbcExtension.h
- SBMLGroupsTypeCode_t : GroupsExtension.h
- SBMLLayoutTypeCode_t : LayoutExtension.h
- SBMLNamespaceInAnnotation : SBMLError.h
- SBMLNamespaces_addNamespaces() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_addPackageNamespace() : SBMLNamespaces.h, SBMLNamespaces.cpp
- SBMLNamespaces_addPackageNamespaces() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_create() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_free() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_getLevel() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_getNamespaces() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_getSBMLNamespaceURI() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_getSupportedNamespaces() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLNamespaces_getVersion() : SBMLNamespaces.cpp, SBMLNamespaces.h
- SBMLQualTypeCode_t : QualExtension.h
- SBMLReader_create() : SBMLReader.cpp, SBMLReader.h
- SBMLReader_free() : SBMLReader.cpp, SBMLReader.h
- SBMLReader_hasBzip2() : SBMLReader.cpp, SBMLReader.h
- SBMLReader_hasZlib() : SBMLReader.cpp, SBMLReader.h
- SBMLReader_readSBML() : SBMLReader.cpp, SBMLReader.h
- SBMLReader_readSBMLFromFile() : SBMLReader.h, SBMLReader.cpp
- SBMLReader_readSBMLFromString() : SBMLReader.cpp, SBMLReader.h
- SBMLTypeCode_t : SBMLTypeCodes.h
- SBMLTypeCode_toString() : SBMLTypeCodes.cpp, SBMLTypeCodes.h
- SBMLWriter_create() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_free() : SBMLWriter.h, SBMLWriter.cpp
- SBMLWriter_hasBzip2() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_hasZlib() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_setProgramName() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_setProgramVersion() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_writeSBML() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_writeSBMLToFile() : SBMLWriter.cpp, SBMLWriter.h
- SBMLWriter_writeSBMLToString() : SBMLWriter.cpp, SBMLWriter.h
- SBOTermNotUniversalInL2v2 : SBMLError.h
- SBOTermNotValidAttributeBeforeL2V2 : SBMLError.h
- SBOTermNotValidAttributeBeforeL2V3 : SBMLError.h
- SET_ID : SBMLConvert.cpp
- setSBMLDefinitionURLs() : MathML.cpp
- SpatialSizeUnitsNotValidAttribute : SBMLError.h
- SpatialSizeUnitsRemoved : SBMLError.h
- SpatialUnitsInOneD : SBMLError.h
- SpatialUnitsInThreeD : SBMLError.h
- SpatialUnitsInTwoD : SBMLError.h
- Species_clone() : Species.h, Species.cpp
- Species_create() : Species.h, Species.cpp
- Species_createWithNS() : Species.h, Species.cpp
- Species_free() : Species.cpp, Species.h
- Species_getBoundaryCondition() : Species.cpp, Species.h
- Species_getCharge() : Species.cpp, Species.h
- Species_getCompartment() : Species.cpp, Species.h
- Species_getConstant() : Species.cpp, Species.h
- Species_getConversionFactor() : Species.cpp, Species.h
- Species_getDerivedUnitDefinition() : Species.cpp, Species.h
- Species_getHasOnlySubstanceUnits() : Species.cpp, Species.h
- Species_getId() : Species.cpp, Species.h
- Species_getInitialAmount() : Species.cpp, Species.h
- Species_getInitialConcentration() : Species.cpp, Species.h
- Species_getName() : Species.cpp, Species.h
- Species_getNamespaces() : Species.cpp, Species.h
- Species_getSpatialSizeUnits() : Species.cpp, Species.h
- Species_getSpeciesType() : Species.cpp, Species.h
- Species_getSubstanceUnits() : Species.cpp, Species.h
- Species_getUnits() : Species.cpp, Species.h
- Species_hasRequiredAttributes() : Species.cpp, Species.h
- Species_initDefaults() : Species.cpp, Species.h
- Species_isSetBoundaryCondition() : Species.cpp, Species.h
- Species_isSetCharge() : Species.cpp, Species.h
- Species_isSetCompartment() : Species.cpp, Species.h
- Species_isSetConstant() : Species.cpp, Species.h
- Species_isSetConversionFactor() : Species.cpp, Species.h
- Species_isSetHasOnlySubstanceUnits() : Species.cpp, Species.h
- Species_isSetId() : Species.h, Species.cpp
- Species_isSetInitialAmount() : Species.cpp, Species.h
- Species_isSetInitialConcentration() : Species.cpp, Species.h
- Species_isSetName() : Species.cpp, Species.h
- Species_isSetSpatialSizeUnits() : Species.cpp, Species.h
- Species_isSetSpeciesType() : Species.cpp, Species.h
- Species_isSetSubstanceUnits() : Species.cpp, Species.h
- Species_isSetUnits() : Species.cpp, Species.h
- SPECIES_ROLE_ACTIVATOR : SpeciesReferenceRole.h
- SPECIES_ROLE_INHIBITOR : SpeciesReferenceRole.h
- SPECIES_ROLE_INVALID : SpeciesReferenceRole.h
- SPECIES_ROLE_MODIFIER : SpeciesReferenceRole.h
- SPECIES_ROLE_PRODUCT : SpeciesReferenceRole.h
- SPECIES_ROLE_SIDEPRODUCT : SpeciesReferenceRole.h
- SPECIES_ROLE_SIDESUBSTRATE : SpeciesReferenceRole.h
- SPECIES_ROLE_SUBSTRATE : SpeciesReferenceRole.h
- SPECIES_ROLE_UNDEFINED : SpeciesReferenceRole.h
- Species_setBoundaryCondition() : Species.cpp, Species.h
- Species_setCharge() : Species.cpp, Species.h
- Species_setCompartment() : Species.cpp, Species.h
- Species_setConstant() : Species.cpp, Species.h
- Species_setConversionFactor() : Species.cpp, Species.h
- Species_setHasOnlySubstanceUnits() : Species.cpp, Species.h
- Species_setId() : Species.cpp, Species.h
- Species_setInitialAmount() : Species.h, Species.cpp
- Species_setInitialConcentration() : Species.cpp, Species.h
- Species_setName() : Species.cpp, Species.h
- Species_setSpatialSizeUnits() : Species.cpp, Species.h
- Species_setSpeciesType() : Species.cpp, Species.h
- Species_setSubstanceUnits() : Species.cpp, Species.h
- Species_setUnits() : Species.cpp, Species.h
- Species_unsetBoundaryCondition() : Species.cpp, Species.h
- Species_unsetCharge() : Species.cpp, Species.h
- Species_unsetCompartment() : Species.h, Species.cpp
- Species_unsetConstant() : Species.cpp, Species.h
- Species_unsetConversionFactor() : Species.cpp, Species.h
- Species_unsetHasOnlySubstanceUnits() : Species.cpp, Species.h
- Species_unsetId() : Species.cpp, Species.h
- Species_unsetInitialAmount() : Species.cpp, Species.h
- Species_unsetInitialConcentration() : Species.cpp, Species.h
- Species_unsetName() : Species.cpp, Species.h
- Species_unsetSpatialSizeUnits() : Species.cpp, Species.h
- Species_unsetSpeciesType() : Species.cpp, Species.h
- Species_unsetSubstanceUnits() : Species.cpp, Species.h
- Species_unsetUnits() : Species.cpp, Species.h
- SpeciesCompartmentRequiredInL1 : SBMLError.h
- SpeciesFeature_addSpeciesFeatureValue() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_clone() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_create() : SpeciesFeature.h, SpeciesFeature.cpp
- SpeciesFeature_createSpeciesFeatureValue() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_free() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getComponent() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getId() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getListOfSpeciesFeatureValues() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getName() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getNumSpeciesFeatureValues() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getOccur() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getSpeciesFeatureType() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_getSpeciesFeatureValue() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_hasRequiredAttributes() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_isSetComponent() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_isSetId() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_isSetName() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_isSetOccur() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_isSetSpeciesFeatureType() : SpeciesFeature.h, SpeciesFeature.cpp
- SpeciesFeature_removeSpeciesFeatureValue() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_setComponent() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_setId() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_setName() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_setOccur() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_setSpeciesFeatureType() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_t : multifwd.h
- SpeciesFeature_unsetComponent() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_unsetId() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_unsetName() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_unsetOccur() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeature_unsetSpeciesFeatureType() : SpeciesFeature.cpp, SpeciesFeature.h
- SpeciesFeatureType_addPossibleSpeciesFeatureValue() : SpeciesFeatureType.h
- SpeciesFeatureType_clone() : SpeciesFeatureType.h
- SpeciesFeatureType_create() : SpeciesFeatureType.h
- SpeciesFeatureType_createPossibleSpeciesFeatureValue() : SpeciesFeatureType.h
- SpeciesFeatureType_free() : SpeciesFeatureType.h
- SpeciesFeatureType_getId() : SpeciesFeatureType.h
- SpeciesFeatureType_getListOfPossibleSpeciesFeatureValues() : SpeciesFeatureType.h
- SpeciesFeatureType_getName() : SpeciesFeatureType.h
- SpeciesFeatureType_getNumPossibleSpeciesFeatureValues() : SpeciesFeatureType.h
- SpeciesFeatureType_getOccur() : SpeciesFeatureType.h
- SpeciesFeatureType_getPossibleSpeciesFeatureValue() : SpeciesFeatureType.h
- SpeciesFeatureType_getPossibleSpeciesFeatureValueById() : SpeciesFeatureType.h
- SpeciesFeatureType_hasRequiredAttributes() : SpeciesFeatureType.h
- SpeciesFeatureType_isSetId() : SpeciesFeatureType.h
- SpeciesFeatureType_isSetName() : SpeciesFeatureType.h
- SpeciesFeatureType_isSetOccur() : SpeciesFeatureType.h
- SpeciesFeatureType_removePossibleSpeciesFeatureValue() : SpeciesFeatureType.h
- SpeciesFeatureType_removePossibleSpeciesFeatureValueById() : SpeciesFeatureType.h
- SpeciesFeatureType_setId() : SpeciesFeatureType.h
- SpeciesFeatureType_setName() : SpeciesFeatureType.h
- SpeciesFeatureType_setOccur() : SpeciesFeatureType.h
- SpeciesFeatureType_t : multifwd.h
- SpeciesFeatureType_unsetId() : SpeciesFeatureType.h
- SpeciesFeatureType_unsetName() : SpeciesFeatureType.h
- SpeciesFeatureType_unsetOccur() : SpeciesFeatureType.h
- SpeciesFeatureValue_clone() : SpeciesFeatureValue.h
- SpeciesFeatureValue_create() : SpeciesFeatureValue.h
- SpeciesFeatureValue_free() : SpeciesFeatureValue.h
- SpeciesFeatureValue_getValue() : SpeciesFeatureValue.h
- SpeciesFeatureValue_hasRequiredAttributes() : SpeciesFeatureValue.h
- SpeciesFeatureValue_isSetValue() : SpeciesFeatureValue.h
- SpeciesFeatureValue_setValue() : SpeciesFeatureValue.h
- SpeciesFeatureValue_t : multifwd.h
- SpeciesFeatureValue_unsetValue() : SpeciesFeatureValue.h
- SpeciesGlyph_clone() : SpeciesGlyph.h, SpeciesGlyph.cpp
- SpeciesGlyph_create() : SpeciesGlyph.h, SpeciesGlyph.cpp
- SpeciesGlyph_createFrom() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_createWith() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_createWithSpeciesId() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_free() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_getSpeciesId() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_initDefaults() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_isSetSpeciesId() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_setSpeciesId() : SpeciesGlyph.cpp, SpeciesGlyph.h
- SpeciesGlyph_t : layoutfwd.h
- SpeciesInvalidExtentUnits : SBMLError.h
- SpeciesReference_clone() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_create() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_createModifier() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_createModifierWithNS() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_createStoichiometryMath() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_createWithNS() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_free() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getConstant() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getDenominator() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getId() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getName() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getNamespaces() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getSpecies() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getStoichiometry() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_getStoichiometryMath() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_hasRequiredAttributes() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_initDefaults() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isModifier() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetConstant() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetId() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetName() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetSpecies() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetStoichiometry() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_isSetStoichiometryMath() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setConstant() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setDenominator() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setId() : SpeciesReference.h, SpeciesReference.cpp
- SpeciesReference_setName() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setSpecies() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setStoichiometry() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_setStoichiometryMath() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetConstant() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetId() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetName() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetSpecies() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetStoichiometry() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReference_unsetStoichiometryMath() : SpeciesReference.cpp, SpeciesReference.h
- SpeciesReferenceGlyph_clone() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_create() : SpeciesReferenceGlyph.h, SpeciesReferenceGlyph.cpp
- SpeciesReferenceGlyph_createCubicBezier() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_createFrom() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_createLineSegment() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_createWith() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_free() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_getCurve() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_getId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_getRole() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_getRoleString() : SpeciesReferenceGlyph.h, SpeciesReferenceGlyph.cpp
- SpeciesReferenceGlyph_getSpeciesGlyphId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_getSpeciesReferenceId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_initDefaults() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_isSetCurve() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_isSetId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_isSetRole() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_isSetSpeciesGlyphId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_isSetSpeciesReferenceId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_setCurve() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_setId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_setRole() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_setSpeciesGlyphId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_setSpeciesReferenceId() : SpeciesReferenceGlyph.cpp, SpeciesReferenceGlyph.h
- SpeciesReferenceGlyph_t : layoutfwd.h
- SpeciesReferenceGlyph_unsetId() : SpeciesReferenceGlyph.h, SpeciesReferenceGlyph.cpp
- SpeciesReferenceRole_t : SpeciesReferenceRole.h
- SpeciesRefIdInMathMLNotSupported : SBMLError.h
- SpeciesShouldHaveValue : SBMLError.h
- SpeciesType_clone() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_create() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_createWithNS() : SpeciesType.h, SpeciesType.cpp
- SpeciesType_free() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_getId() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_getName() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_getNamespaces() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_isSetId() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_isSetName() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_setId() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_setName() : SpeciesType.cpp, SpeciesType.h
- SpeciesType_unsetName() : SpeciesType.cpp, SpeciesType.h
- SpeciesTypeComponentIndex_clone() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_create() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_free() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_getComponent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_getId() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_getIdentifyingParent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_getName() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_hasRequiredAttributes() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_isSetComponent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_isSetId() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_isSetIdentifyingParent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_isSetName() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_setComponent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_setId() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_setIdentifyingParent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_setName() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_t : multifwd.h
- SpeciesTypeComponentIndex_unsetComponent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_unsetId() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_unsetIdentifyingParent() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentIndex_unsetName() : SpeciesTypeComponentIndex.h
- SpeciesTypeComponentMapInProduct_clone() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_create() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_free() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_getId() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_getName() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_getProductComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_getReactant() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_getReactantComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_hasRequiredAttributes() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_isSetId() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_isSetName() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_isSetProductComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_isSetReactant() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_isSetReactantComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_setId() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_setName() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_setProductComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_setReactant() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_setReactantComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_t : multifwd.h
- SpeciesTypeComponentMapInProduct_unsetId() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_unsetName() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_unsetProductComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_unsetReactant() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeComponentMapInProduct_unsetReactantComponent() : SpeciesTypeComponentMapInProduct.h
- SpeciesTypeInstance_clone() : SpeciesTypeInstance.h
- SpeciesTypeInstance_create() : SpeciesTypeInstance.h
- SpeciesTypeInstance_free() : SpeciesTypeInstance.h
- SpeciesTypeInstance_getCompartmentReference() : SpeciesTypeInstance.h
- SpeciesTypeInstance_getId() : SpeciesTypeInstance.h
- SpeciesTypeInstance_getName() : SpeciesTypeInstance.h
- SpeciesTypeInstance_getSpeciesType() : SpeciesTypeInstance.h
- SpeciesTypeInstance_hasRequiredAttributes() : SpeciesTypeInstance.h
- SpeciesTypeInstance_isSetCompartmentReference() : SpeciesTypeInstance.h
- SpeciesTypeInstance_isSetId() : SpeciesTypeInstance.h
- SpeciesTypeInstance_isSetName() : SpeciesTypeInstance.h
- SpeciesTypeInstance_isSetSpeciesType() : SpeciesTypeInstance.h
- SpeciesTypeInstance_setCompartmentReference() : SpeciesTypeInstance.h
- SpeciesTypeInstance_setId() : SpeciesTypeInstance.h
- SpeciesTypeInstance_setName() : SpeciesTypeInstance.h
- SpeciesTypeInstance_setSpeciesType() : SpeciesTypeInstance.h
- SpeciesTypeInstance_t : multifwd.h
- SpeciesTypeInstance_unsetCompartmentReference() : SpeciesTypeInstance.h
- SpeciesTypeInstance_unsetId() : SpeciesTypeInstance.h
- SpeciesTypeInstance_unsetName() : SpeciesTypeInstance.h
- SpeciesTypeInstance_unsetSpeciesType() : SpeciesTypeInstance.h
- SpeciesTypeNotValidAttribute : SBMLError.h
- SpeciesTypeNotValidComponent : SBMLError.h
- START_CONSTRAINT : ConstraintMacros.h
- START_STATE : FormulaParser.cpp
- StoichiometryMath_clone() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_containsUndeclaredUnits() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_create() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_createWithNS() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_free() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_getDerivedUnitDefinition() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_getMath() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_getNamespaces() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_isSetMath() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMath_setMath() : StoichiometryMath.cpp, StoichiometryMath.h
- StoichiometryMathMissingMath : SBMLError.h
- StoichiometryMathNotValidComponent : SBMLError.h
- StoichiometryMathNotYetSupported : SBMLError.h
- strcmp_insensitive() : util.cpp, util.h
- streq() : util.cpp, util.h
- StrictSBORequiredInL2v2 : SBMLError.h
- StrictSBORequiredInL2v3 : SBMLError.h
- StrictUnitsRequiredInL1 : SBMLError.h
- StrictUnitsRequiredInL2v1 : SBMLError.h
- StrictUnitsRequiredInL2v2 : SBMLError.h
- StrictUnitsRequiredInL2v3 : SBMLError.h
- SubListOfSpeciesFeatures_clone() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_create() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_createSpeciesFeature() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_free() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getComponent() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getId() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getName() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getNumSpeciesFeatures() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getRelation() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_getRelationAsString() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_hasRequiredAttributes() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isSetComponent() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isSetId() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isSetName() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isSetRelation() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isValidRelation() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_isValidRelationString() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_setComponent() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_setId() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_setName() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_setRelation() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_setRelationAsString() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_t : multifwd.h
- SubListOfSpeciesFeatures_unsetComponent() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_unsetId() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_unsetName() : SubListOfSpeciesFeatures.h
- SubListOfSpeciesFeatures_unsetRelation() : SubListOfSpeciesFeatures.h
- Submodel_addDeletion() : Submodel.cpp, Submodel.h
- Submodel_clone() : Submodel.cpp, Submodel.h
- Submodel_create() : Submodel.cpp, Submodel.h
- Submodel_createDeletion() : Submodel.cpp, Submodel.h
- Submodel_free() : Submodel.cpp, Submodel.h
- Submodel_getDeletion() : Submodel.cpp, Submodel.h
- Submodel_getDeletionById() : Submodel.cpp, Submodel.h
- Submodel_getExtentConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_getId() : Submodel.cpp, Submodel.h
- Submodel_getListOfDeletions() : Submodel.cpp, Submodel.h
- Submodel_getModelRef() : Submodel.cpp, Submodel.h
- Submodel_getName() : Submodel.cpp, Submodel.h
- Submodel_getNumDeletions() : Submodel.cpp, Submodel.h
- Submodel_getSubstanceConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_getTimeConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_hasRequiredAttributes() : Submodel.cpp, Submodel.h
- Submodel_hasRequiredElements() : Submodel.cpp, Submodel.h
- Submodel_isSetExtentConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_isSetId() : Submodel.cpp, Submodel.h
- Submodel_isSetModelRef() : Submodel.cpp, Submodel.h
- Submodel_isSetName() : Submodel.cpp, Submodel.h
- Submodel_isSetSubstanceConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_isSetTimeConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_removeDeletion() : Submodel.cpp, Submodel.h
- Submodel_removeDeletionById() : Submodel.cpp, Submodel.h
- Submodel_setExtentConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_setId() : Submodel.cpp, Submodel.h
- Submodel_setModelRef() : Submodel.cpp, Submodel.h
- Submodel_setName() : Submodel.cpp, Submodel.h
- Submodel_setSubstanceConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_setTimeConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_unsetExtentConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_unsetId() : Submodel.cpp, Submodel.h
- Submodel_unsetModelRef() : Submodel.cpp, Submodel.h
- Submodel_unsetName() : Submodel.cpp, Submodel.h
- Submodel_unsetSubstanceConversionFactor() : Submodel.cpp, Submodel.h
- Submodel_unsetTimeConversionFactor() : Submodel.cpp, Submodel.h
- SubstanceUnitsOnSpecies : SBMLError.h
- SubsUnitsAllowedInKL : SBMLError.h
- SubsUnitsNoLongerValid : SBMLError.h
- SyntaxChecker_hasExpectedXHTMLSyntax() : SyntaxChecker.cpp, SyntaxChecker.h
- SyntaxChecker_isValidSBMLSId() : SyntaxChecker.cpp, SyntaxChecker.h
- SyntaxChecker_isValidUnitSId() : SyntaxChecker.cpp, SyntaxChecker.h
- SyntaxChecker_isValidXMLID() : SyntaxChecker.cpp, SyntaxChecker.h